Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 AC055811.4-201ENST00000624039 1754 ntBASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRIM49D1C9J1S8 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 BEND3P1-201ENST00000421591 1944 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TPT1P11-201ENST00000458482 498 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 RN7SL618P-201ENST00000477850 296 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AC010336.2-201ENST00000564226 506 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AC051619.7-201ENST00000568314 623 ntBASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRIM49D1C9J1S8 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRIM49D1C9J1S8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms