Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 KRT17P5-201ENST00000332088 839 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 AC092638.2-201ENST00000441105 947 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 PGAM1P12-201ENST00000505622 748 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 AC138466.4-201ENST00000623965 852 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 AC084018.2-201ENST00000613093 2607 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 ACE3P-201ENST00000423435 1973 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 AC079328.2-201ENST00000561241 3354 ntBASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 USP4-203ENST00000415188 1454 ntTSL 3 BASIC18.98■□□□□ 0.63
SHANK3Q9BYB0 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 DUX4L50-201ENST00000455245 715 ntBASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 API5-208ENST00000531273 1868 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 AC027139.1-201ENST00000565286 951 ntBASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK3Q9BYB0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 LINC00528-201ENST00000600723 2160 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 PYY2-201ENST00000315776 282 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 ACTBP7-201ENST00000418351 1124 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC108734.2-201ENST00000420887 1069 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC012158.2-201ENST00000536546 354 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 FTLP5-201ENST00000586853 534 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC006158.1-201ENST00000610661 249 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC006504.5-208ENST00000588784 2401 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 BRD7P5-201ENST00000299197 1822 ntBASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK3Q9BYB0 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.96■□□□□ 0.62
SHANK3Q9BYB0 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK3Q9BYB0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms