Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 ARHGEF10-205ENST00000518288 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 CSPG4P13-202ENST00000567704 4801 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 BCL9-201ENST00000234739 6278 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 KRT8P44-201ENST00000441609 1350 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC013726.1-201ENST00000563747 2285 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LINC01230-201ENST00000625222 3017 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 EML1-203ENST00000334192 4064 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AL645939.2-201ENST00000427340 991 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC117500.6-201ENST00000624871 588 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 KIAA0513-206ENST00000566428 7772 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 COCH-203ENST00000460581 2688 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 AC006254.1-201ENST00000468472 5640 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
AP1S3Q96PC3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 AC091951.1-201ENST00000512854 2465 ntBASIC11.55□□□□□ -0.56
AP1S3Q96PC3 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 TGFBRAP1-203ENST00000595531 5595 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
AP1S3Q96PC3 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms