Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 LRRC59-203ENST00000576448 1531 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC055811.4-201ENST00000624039 1754 ntBASIC11.74□□□□□ -0.53
CCDC140Q96MF4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC11.74□□□□□ -0.53
CCDC140Q96MF4 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC007686.3-201ENST00000619017 3487 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 RN7SL692P-201ENST00000464677 288 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 GIMAP3P-201ENST00000495150 836 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC026434.2-201ENST00000506094 1078 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC010319.3-201ENST00000597028 470 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 MTHFR-210ENST00000641407 2387 ntBASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
CCDC140Q96MF4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 AC099063.4-201ENST00000641099 1602 ntBASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.72□□□□□ -0.53
CCDC140Q96MF4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms