Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 CICP14-201ENST00000629111 2732 ntBASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 AC018529.2-202ENST00000611482 3087 ntBASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 CLUHP2-201ENST00000426660 1303 ntBASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ZIC4Q8N9L1 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 FAM197Y7-201ENST00000432892 766 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 C2orf27AP3-201ENST00000434123 579 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 MESTP3-201ENST00000503460 968 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 RNA5SP486-201ENST00000515961 83 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AL354718.3-201ENST00000616414 581 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 CR382287.1-201ENST00000623954 586 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AC023824.1-201ENST00000562945 2975 ntBASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.37□□□□□ -0.27
ZIC4Q8N9L1 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 PDIA3P1-201ENST00000471856 1510 ntBASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 TPM3P8-201ENST00000330554 643 ntBASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ZIC4Q8N9L1 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms