Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 RPSAP52-203ENST00000622976 1023 ntBASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 AC134312.5-201ENST00000568031 1313 ntBASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
NUP54Q7Z3B4 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 DBET-201ENST00000630918 3363 ntBASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AL139094.1-201ENST00000405549 1188 ntBASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AC012441.1-201ENST00000446669 685 ntBASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SLC25A47P1-201ENST00000531577 414 ntBASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 AC144831.1-201ENST00000573312 2656 ntBASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
NUP54Q7Z3B4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 KLF2P2-201ENST00000416807 1039 ntBASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 AL355864.2-201ENST00000447420 863 ntBASIC14.05□□□□□ -0.16
NUP54Q7Z3B4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms