Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 AC245884.6-201ENST00000515672 1067 ntBASIC17.69■□□□□ 0.42
RHBDL3P58872 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.69■□□□□ 0.42
RHBDL3P58872 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.69■□□□□ 0.42
RHBDL3P58872 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.69■□□□□ 0.42
RHBDL3P58872 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.69■□□□□ 0.42
RHBDL3P58872 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 PKD1P1-201ENST00000458669 6805 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RHBDL3P58872 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 AC091046.1-201ENST00000331871 207 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RHBDL3P58872 RN7SL720P-201ENST00000488178 304 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.68■□□□□ 0.42
RHBDL3P58872 NUP210P1-202ENST00000504322 710 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.68■□□□□ 0.42
RHBDL3P58872 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC17.68■□□□□ 0.42
RHBDL3P58872 AL161670.2-201ENST00000557650 1227 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.68■□□□□ 0.42
RHBDL3P58872 AC008805.1-201ENST00000590892 364 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.68■□□□□ 0.42
RHBDL3P58872 AL136295.7-201ENST00000619226 1200 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 LINC01101-201ENST00000622953 1884 ntBASIC17.68■□□□□ 0.42
RHBDL3P58872 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.68■□□□□ 0.42
RHBDL3P58872 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
RHBDL3P58872 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.68■□□□□ 0.42
RHBDL3P58872 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.68■□□□□ 0.42
RHBDL3P58872 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.68■□□□□ 0.42
RHBDL3P58872 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.68■□□□□ 0.42
RHBDL3P58872 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RHBDL3P58872 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RHBDL3P58872 AC013268.4-201ENST00000637413 2228 ntBASIC17.67■□□□□ 0.42
RHBDL3P58872 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RHBDL3P58872 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RHBDL3P58872 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.67■□□□□ 0.42
RHBDL3P58872 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.67■□□□□ 0.42
RHBDL3P58872 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 RN7SKP214-201ENST00000364208 315 ntBASIC17.67■□□□□ 0.42
RHBDL3P58872 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RHBDL3P58872 AL596276.2-201ENST00000447525 331 ntBASIC17.67■□□□□ 0.42
RHBDL3P58872 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.67■□□□□ 0.42
RHBDL3P58872 AC012618.1-201ENST00000461223 412 ntBASIC17.67■□□□□ 0.42
RHBDL3P58872 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.67■□□□□ 0.42
RHBDL3P58872 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
RHBDL3P58872 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.67■□□□□ 0.42
RHBDL3P58872 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
RHBDL3P58872 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 AL157791.1-201ENST00000553667 1699 ntBASIC17.67■□□□□ 0.42
RHBDL3P58872 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
RHBDL3P58872 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RHBDL3P58872 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.66■□□□□ 0.42
RHBDL3P58872 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RHBDL3P58872 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
RHBDL3P58872 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
RHBDL3P58872 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RHBDL3P58872 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms