Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.42■□□□□ 0.54
NUP98P52948 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.42■□□□□ 0.54
NUP98P52948 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.42■□□□□ 0.54
NUP98P52948 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
NUP98P52948 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
NUP98P52948 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 JTB-202ENST00000356648 1040 ntTSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.42■□□□□ 0.54
NUP98P52948 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 AL627389.1-201ENST00000413508 1182 ntBASIC18.42■□□□□ 0.54
NUP98P52948 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.42■□□□□ 0.54
NUP98P52948 RN7SL8P-201ENST00000461771 266 ntBASIC18.42■□□□□ 0.54
NUP98P52948 RN7SL81P-201ENST00000493781 261 ntBASIC18.42■□□□□ 0.54
NUP98P52948 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NUP98P52948 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.42■□□□□ 0.54
NUP98P52948 AC103691.2-201ENST00000618824 433 ntBASIC18.42■□□□□ 0.54
NUP98P52948 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
NUP98P52948 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.42■□□□□ 0.54
NUP98P52948 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.41■□□□□ 0.54
NUP98P52948 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.41■□□□□ 0.54
NUP98P52948 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
NUP98P52948 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
NUP98P52948 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.41■□□□□ 0.54
NUP98P52948 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.41■□□□□ 0.54
NUP98P52948 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.41■□□□□ 0.54
NUP98P52948 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.41■□□□□ 0.54
NUP98P52948 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.41■□□□□ 0.54
NUP98P52948 AC025262.2-201ENST00000623975 1056 ntBASIC18.41■□□□□ 0.54
NUP98P52948 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
NUP98P52948 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NUP98P52948 AL136172.1-201ENST00000598590 1394 ntBASIC18.4■□□□□ 0.54
NUP98P52948 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 AC006504.5-208ENST00000588784 2401 ntBASIC18.4■□□□□ 0.54
NUP98P52948 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
NUP98P52948 AL512430.1-201ENST00000392575 860 ntBASIC18.4■□□□□ 0.54
NUP98P52948 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.4■□□□□ 0.54
NUP98P52948 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 RPSAP15-201ENST00000448168 861 ntBASIC18.4■□□□□ 0.54
NUP98P52948 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.4■□□□□ 0.54
NUP98P52948 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.4■□□□□ 0.54
NUP98P52948 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.4■□□□□ 0.54
NUP98P52948 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NUP98P52948 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.4■□□□□ 0.54
NUP98P52948 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NUP98P52948 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP98P52948 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.39■□□□□ 0.54
NUP98P52948 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
NUP98P52948 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.39■□□□□ 0.54
NUP98P52948 AC003686.1-201ENST00000550956 1034 ntBASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms