Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 FDX1P1-201ENST00000449115 551 ntBASIC13.43□□□□□ -0.26
SOX2P48431 CEND1P1-201ENST00000451006 455 ntBASIC13.43□□□□□ -0.26
SOX2P48431 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.43□□□□□ -0.26
SOX2P48431 AC025181.2-201ENST00000606994 802 ntBASIC13.43□□□□□ -0.26
SOX2P48431 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.43□□□□□ -0.26
SOX2P48431 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX2P48431 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
SOX2P48431 HSPA7-201ENST00000445535 1927 ntBASIC13.43□□□□□ -0.26
SOX2P48431 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX2P48431 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.42□□□□□ -0.26
SOX2P48431 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.42□□□□□ -0.26
SOX2P48431 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SOX2P48431 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 MKNK2P1-201ENST00000437526 628 ntBASIC13.42□□□□□ -0.26
SOX2P48431 RBPMS2P1-201ENST00000437762 623 ntBASIC13.42□□□□□ -0.26
SOX2P48431 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.42□□□□□ -0.26
SOX2P48431 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX2P48431 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
SOX2P48431 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.42□□□□□ -0.26
SOX2P48431 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.42□□□□□ -0.26
SOX2P48431 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX2P48431 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX2P48431 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX2P48431 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 AC105339.1-204ENST00000636249 355 ntBASIC13.42□□□□□ -0.26
SOX2P48431 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SOX2P48431 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX2P48431 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
SOX2P48431 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX2P48431 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX2P48431 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX2P48431 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms