Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
MSH3P20585 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
MSH3P20585 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.14■□□□□ 0.01
MSH3P20585 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 ACKR1-201ENST00000368121 1240 ntBASIC15.14■□□□□ 0.01
MSH3P20585 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
MSH3P20585 ACTG1P3-201ENST00000431775 1114 ntBASIC15.14■□□□□ 0.01
MSH3P20585 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 KRT18P25-201ENST00000508931 1278 ntBASIC15.14■□□□□ 0.01
MSH3P20585 PTP4A1P2-201ENST00000546033 454 ntBASIC15.14■□□□□ 0.01
MSH3P20585 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.14■□□□□ 0.01
MSH3P20585 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 AP005019.2-201ENST00000615104 511 ntBASIC15.14■□□□□ 0.01
MSH3P20585 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
MSH3P20585 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 AC013726.1-201ENST00000563747 2285 ntBASIC15.14■□□□□ 0.01
MSH3P20585 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.14■□□□□ 0.01
MSH3P20585 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.14■□□□□ 0.01
MSH3P20585 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSH3P20585 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.13■□□□□ 0.01
MSH3P20585 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 TTTY23B-201ENST00000442790 549 ntBASIC15.13■□□□□ 0.01
MSH3P20585 AC114812.1-204ENST00000449669 728 ntBASIC15.13■□□□□ 0.01
MSH3P20585 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 AC093433.1-201ENST00000458048 571 ntBASIC15.13■□□□□ 0.01
MSH3P20585 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 AC132938.2-201ENST00000579188 680 ntBASIC15.13■□□□□ 0.01
MSH3P20585 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.13■□□□□ 0.01
MSH3P20585 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
MSH3P20585 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.13■□□□□ 0.01
MSH3P20585 AL591163.1-201ENST00000641757 987 ntBASIC15.13■□□□□ 0.01
MSH3P20585 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSH3P20585 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms