Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.32■□□□□ 0.04
VIMP08670 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
VIMP08670 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
VIMP08670 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
VIMP08670 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 AC136604.1-201ENST00000418535 575 ntBASIC15.32■□□□□ 0.04
VIMP08670 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.32■□□□□ 0.04
VIMP08670 AL139010.1-201ENST00000454878 894 ntBASIC15.32■□□□□ 0.04
VIMP08670 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.32■□□□□ 0.04
VIMP08670 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.32■□□□□ 0.04
VIMP08670 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VIMP08670 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
VIMP08670 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VIMP08670 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 MIR193BHG-211ENST00000641433 5365 ntBASIC15.31■□□□□ 0.04
VIMP08670 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 RNA5SP410-201ENST00000516285 106 ntBASIC15.31■□□□□ 0.04
VIMP08670 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.31■□□□□ 0.04
VIMP08670 AF238378.1-201ENST00000526806 358 ntBASIC15.31■□□□□ 0.04
VIMP08670 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.31■□□□□ 0.04
VIMP08670 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 AL138918.1-201ENST00000568306 659 ntBASIC15.31■□□□□ 0.04
VIMP08670 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.31■□□□□ 0.04
VIMP08670 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 AC007787.1-201ENST00000588095 1583 ntBASIC15.31■□□□□ 0.04
VIMP08670 Z82170.1-201ENST00000625081 3192 ntBASIC15.31■□□□□ 0.04
VIMP08670 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.31■□□□□ 0.04
VIMP08670 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.31■□□□□ 0.04
VIMP08670 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VIMP08670 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 AKR1C7P-201ENST00000305623 895 ntBASIC15.3■□□□□ 0.04
VIMP08670 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
VIMP08670 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.3■□□□□ 0.04
VIMP08670 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VIMP08670 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.3■□□□□ 0.04
VIMP08670 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
VIMP08670 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms