Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 AC023908.3-201ENST00000564211 3047 ntBASIC21.5■■□□□ 1.03
MSH5O43196 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 GLIPR2-201ENST00000377959 812 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 AC104164.3-201ENST00000467363 1258 ntBASIC21.5■■□□□ 1.03
MSH5O43196 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 METTL15P1-201ENST00000481421 1045 ntBASIC21.5■■□□□ 1.03
MSH5O43196 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC21.5■■□□□ 1.03
MSH5O43196 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 AC053513.1-201ENST00000543604 738 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 AC023161.1-201ENST00000549532 420 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 AC007728.2-202ENST00000567728 1150 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH5O43196 AC068790.6-201ENST00000602558 258 ntBASIC21.5■■□□□ 1.03
MSH5O43196 AC080078.2-201ENST00000603766 501 ntBASIC21.5■■□□□ 1.03
MSH5O43196 AC098935.2-201ENST00000604222 466 ntBASIC21.5■■□□□ 1.03
MSH5O43196 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH5O43196 AC135803.1-201ENST00000608748 565 ntBASIC21.5■■□□□ 1.03
MSH5O43196 AC018529.1-201ENST00000613063 361 ntBASIC21.5■■□□□ 1.03
MSH5O43196 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH5O43196 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH5O43196 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH5O43196 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
MSH5O43196 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH5O43196 FAM45BP-202ENST00000592932 1624 ntBASIC21.5■■□□□ 1.03
MSH5O43196 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.5■■□□□ 1.03
MSH5O43196 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH5O43196 OR5AQ1P-202ENST00000641257 1534 ntBASIC21.5■■□□□ 1.03
MSH5O43196 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH5O43196 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 TAS2R15P-201ENST00000390674 928 ntBASIC21.49■■□□□ 1.03
MSH5O43196 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
MSH5O43196 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 E2F6P1-201ENST00000428850 745 ntBASIC21.49■■□□□ 1.03
MSH5O43196 RPS2P32-201ENST00000439199 892 ntBASIC21.49■■□□□ 1.03
MSH5O43196 E2F6P3-201ENST00000441743 743 ntBASIC21.49■■□□□ 1.03
MSH5O43196 TTC21B-AS1-202ENST00000443032 544 ntTSL 4 BASIC21.49■■□□□ 1.03
MSH5O43196 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH5O43196 AC008565.1-201ENST00000509046 885 ntBASIC21.49■■□□□ 1.03
MSH5O43196 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC21.49■■□□□ 1.03
MSH5O43196 AP003102.1-201ENST00000525638 661 ntBASIC21.49■■□□□ 1.03
MSH5O43196 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.49■■□□□ 1.03
MSH5O43196 AP000403.1-201ENST00000603349 851 ntBASIC21.49■■□□□ 1.03
MSH5O43196 AF117829.2-201ENST00000619538 361 ntBASIC21.49■■□□□ 1.03
MSH5O43196 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH5O43196 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH5O43196 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
MSH5O43196 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.49■■□□□ 1.03
MSH5O43196 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
MSH5O43196 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH5O43196 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
MSH5O43196 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 NXT2-204ENST00000372107 937 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH5O43196 ZNF839P1-201ENST00000403487 861 ntBASIC21.48■■□□□ 1.03
MSH5O43196 AL356806.1-201ENST00000422524 916 ntBASIC21.48■■□□□ 1.03
MSH5O43196 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH5O43196 AC073648.4-201ENST00000442655 781 ntBASIC21.48■■□□□ 1.03
MSH5O43196 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC21.48■■□□□ 1.03
MSH5O43196 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH5O43196 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms