Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC12.29□□□□□ -0.44
HMGB3O15347 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ISCU-203ENST00000431221 799 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 AC108073.2-201ENST00000464002 357 ntBASIC12.29□□□□□ -0.44
HMGB3O15347 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 AL645728.2-201ENST00000641974 660 ntBASIC12.29□□□□□ -0.44
HMGB3O15347 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 PRKG2-201ENST00000264399 4822 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 NFASC-206ENST00000404076 5728 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 BEND3P1-201ENST00000421591 1944 ntBASIC12.29□□□□□ -0.44
HMGB3O15347 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AL691432.1-201ENST00000596308 1422 ntBASIC12.28□□□□□ -0.44
HMGB3O15347 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 OTOG-203ENST00000399397 9948 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC12.28□□□□□ -0.44
HMGB3O15347 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 OR7E14P-202ENST00000530490 1290 ntBASIC12.28□□□□□ -0.44
HMGB3O15347 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC12.28□□□□□ -0.44
HMGB3O15347 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.28□□□□□ -0.44
HMGB3O15347 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.28□□□□□ -0.44
HMGB3O15347 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 WASH3P-207ENST00000560956 1394 ntBASIC12.28□□□□□ -0.44
HMGB3O15347 FO538757.1-201ENST00000623083 1397 ntBASIC12.28□□□□□ -0.44
HMGB3O15347 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 VWDE-201ENST00000275358 5260 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HMGB3O15347 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
HMGB3O15347 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.28□□□□□ -0.44
HMGB3O15347 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HMGB3O15347 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
HMGB3O15347 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms