Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.1■□□□□ 0.65
NPHP1O15259 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 SAMD11P1-201ENST00000571429 661 ntBASIC19.1■□□□□ 0.65
NPHP1O15259 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
NPHP1O15259 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.1■□□□□ 0.65
NPHP1O15259 AC103702.1-201ENST00000548801 2630 ntBASIC19.1■□□□□ 0.65
NPHP1O15259 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
NPHP1O15259 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
NPHP1O15259 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.1■□□□□ 0.65
NPHP1O15259 AC084364.1-201ENST00000551967 1556 ntBASIC19.1■□□□□ 0.65
NPHP1O15259 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.1■□□□□ 0.65
NPHP1O15259 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 PAUPAR-201ENST00000630360 2965 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 KRT8P29-201ENST00000420409 1371 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 LINC02447-202ENST00000501888 2146 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 SDCCAG3P2-201ENST00000326105 1023 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.09■□□□□ 0.65
NPHP1O15259 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.09■□□□□ 0.65
NPHP1O15259 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.09■□□□□ 0.65
NPHP1O15259 POM121L8P-201ENST00000417732 1281 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 GHSR-202ENST00000427970 912 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.09■□□□□ 0.65
NPHP1O15259 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.09■□□□□ 0.65
NPHP1O15259 POM121L9P-203ENST00000441984 1285 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 AC100850.1-201ENST00000506768 649 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC19.09■□□□□ 0.65
NPHP1O15259 U62317.3-201ENST00000608319 855 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 ILF3-AS1-201ENST00000591501 1983 ntBASIC19.09■□□□□ 0.65
NPHP1O15259 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.09■□□□□ 0.65
NPHP1O15259 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC19.09■□□□□ 0.65
NPHP1O15259 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
NPHP1O15259 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.08■□□□□ 0.65
NPHP1O15259 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
NPHP1O15259 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.08■□□□□ 0.65
NPHP1O15259 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
NPHP1O15259 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
NPHP1O15259 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.08■□□□□ 0.64
NPHP1O15259 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.08■□□□□ 0.64
NPHP1O15259 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
NPHP1O15259 TMEM198B-204ENST00000484016 896 ntBASIC19.08■□□□□ 0.64
NPHP1O15259 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms