Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 KRT8P14-201ENST00000414254 1442 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 RPSAP52-203ENST00000622976 1023 ntBASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ATG4BQ9Y4P1 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 RN7SL752P-201ENST00000463779 287 ntBASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
ATG4BQ9Y4P1 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms