Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
KCNIP3Q9Y2W7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC152010.1-201ENST00000415779 2006 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 KRT19P2-202ENST00000557173 1012 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PCDHA5-203ENST00000614258 4248 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC015802.1-201ENST00000588104 1449 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC138969.3-201ENST00000546612 1459 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC138932.2-201ENST00000548268 1459 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 AC126755.4-201ENST00000549796 1459 ntBASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
KCNIP3Q9Y2W7 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 CSPG4P11-201ENST00000560634 4910 ntBASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
KCNIP3Q9Y2W7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms