Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 AC018529.2-202ENST00000611482 3087 ntBASIC13.75□□□□□ -0.21
HIF3AQ9Y2N7 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC005089.1-201ENST00000619486 2241 ntBASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AL645937.2-201ENST00000396808 931 ntBASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AL353779.1-201ENST00000434793 351 ntBASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC104794.3-201ENST00000566840 1248 ntBASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC093512.1-201ENST00000617969 520 ntBASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HIF3AQ9Y2N7 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 MTHFR-210ENST00000641407 2387 ntBASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 MRPS18AP1-201ENST00000414458 589 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms