Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 BOLA2P3-201ENST00000404566 256 ntBASIC14.8□□□□□ -0.04
VPS4AQ9UN37 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AC007389.4-201ENST00000454674 793 ntBASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TPRX2P-201ENST00000535362 881 ntBASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 RN7SL219P-201ENST00000582872 296 ntBASIC14.8□□□□□ -0.04
VPS4AQ9UN37 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 CICP23-201ENST00000605013 2741 ntBASIC14.79□□□□□ -0.04
VPS4AQ9UN37 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 AL080243.2-201ENST00000418783 582 ntBASIC14.79□□□□□ -0.04
VPS4AQ9UN37 MROH4P-201ENST00000431302 1578 ntBASIC14.79□□□□□ -0.04
VPS4AQ9UN37 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 BANF1P1-201ENST00000553684 263 ntBASIC14.79□□□□□ -0.04
VPS4AQ9UN37 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 AC013726.1-201ENST00000563747 2285 ntBASIC14.79□□□□□ -0.04
VPS4AQ9UN37 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS4AQ9UN37 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms