Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 SLC25A24P2-201ENST00000415059 510 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 AC084346.2-201ENST00000607097 949 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 SHC1P1-201ENST00000425230 1745 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PAAF1Q9BRP4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 AC013726.1-201ENST00000563747 2285 ntBASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 DPM3-202ENST00000368399 517 ntBASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 EIF4HP1-201ENST00000453115 687 ntBASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 BNIP3P13-201ENST00000599968 566 ntBASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PAAF1Q9BRP4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PAAF1Q9BRP4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms