Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 AC005632.3-201ENST00000605544 308 ntBASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CNKSR3Q6P9H4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 SALL4P5-201ENST00000419001 1760 ntBASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.08■□□□□ 0.17
CNKSR3Q6P9H4 ZBED1P1-201ENST00000502364 1930 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AL512430.1-201ENST00000392575 860 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AP000358.1-201ENST00000456260 156 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 CTBP2P4-201ENST00000513884 920 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 PHBP15-201ENST00000574228 665 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 CYP4F23P-201ENST00000593402 1579 ntBASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CNKSR3Q6P9H4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 GCOM2-201ENST00000509133 1104 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms