Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RAE1P78406 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.38□□□□□ -0.11
RAE1P78406 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
RAE1P78406 AL354702.1-201ENST00000442006 1960 ntBASIC14.38□□□□□ -0.11
RAE1P78406 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.38□□□□□ -0.11
RAE1P78406 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.38□□□□□ -0.11
RAE1P78406 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RAE1P78406 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.38□□□□□ -0.11
RAE1P78406 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 AC068587.6-202ENST00000641839 5619 ntBASIC14.37□□□□□ -0.11
RAE1P78406 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.37□□□□□ -0.11
RAE1P78406 AC236430.1-201ENST00000402231 743 ntBASIC14.37□□□□□ -0.11
RAE1P78406 AC087499.6-201ENST00000411576 835 ntBASIC14.37□□□□□ -0.11
RAE1P78406 AC002472.2-201ENST00000442739 958 ntBASIC14.37□□□□□ -0.11
RAE1P78406 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 AC022616.1-201ENST00000518688 554 ntBASIC14.37□□□□□ -0.11
RAE1P78406 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 WASH4P-201ENST00000564273 1246 ntBASIC14.37□□□□□ -0.11
RAE1P78406 CLUHP6-201ENST00000580789 941 ntBASIC14.37□□□□□ -0.11
RAE1P78406 AC008494.3-201ENST00000606615 944 ntBASIC14.37□□□□□ -0.11
RAE1P78406 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
RAE1P78406 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 AC055811.4-201ENST00000624039 1754 ntBASIC14.37□□□□□ -0.11
RAE1P78406 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.37□□□□□ -0.11
RAE1P78406 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.37□□□□□ -0.11
RAE1P78406 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RAE1P78406 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
RAE1P78406 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RAE1P78406 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.36□□□□□ -0.11
RAE1P78406 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RAE1P78406 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.36□□□□□ -0.11
RAE1P78406 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.36□□□□□ -0.11
RAE1P78406 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.36□□□□□ -0.11
RAE1P78406 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.36□□□□□ -0.11
RAE1P78406 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RAE1P78406 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RAE1P78406 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.36□□□□□ -0.11
RAE1P78406 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms