Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA4P78363 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 RN7SKP214-201ENST00000364208 315 ntBASIC13.06□□□□□ -0.32
ABCA4P78363 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 EIF3FP3-201ENST00000434851 1086 ntBASIC13.06□□□□□ -0.32
ABCA4P78363 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
ABCA4P78363 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 AF254983.2-201ENST00000612331 135 ntBASIC13.06□□□□□ -0.32
ABCA4P78363 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA4P78363 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 INE2-201ENST00000630399 1874 ntBASIC13.06□□□□□ -0.32
ABCA4P78363 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 MST1L-201ENST00000442552 2185 ntBASIC13.06□□□□□ -0.32
ABCA4P78363 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA4P78363 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.06□□□□□ -0.32
ABCA4P78363 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA4P78363 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA4P78363 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
ABCA4P78363 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.05□□□□□ -0.32
ABCA4P78363 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.05□□□□□ -0.32
ABCA4P78363 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.05□□□□□ -0.32
ABCA4P78363 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC13.05□□□□□ -0.32
ABCA4P78363 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 AP001505.2-201ENST00000616815 443 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 AL023803.2-201ENST00000620080 638 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 AL603832.2-201ENST00000566195 2125 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 AL157414.3-201ENST00000624276 1954 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
ABCA4P78363 MIR4783-201ENST00000580343 82 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 AC138466.3-201ENST00000619983 221 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 TUBBP5-203ENST00000508529 1334 ntBASIC13.05□□□□□ -0.32
ABCA4P78363 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
ABCA4P78363 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.05□□□□□ -0.32
ABCA4P78363 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
ABCA4P78363 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC13.04□□□□□ -0.32
ABCA4P78363 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
ABCA4P78363 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms