Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CNN2P2-201ENST00000443536 909 ntBASIC14.98□□□□□ -0.01
PKNOX1P55347 CNN2P3-201ENST00000450201 906 ntBASIC14.98□□□□□ -0.01
PKNOX1P55347 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PKNOX1P55347 AL138828.2-201ENST00000615812 383 ntBASIC14.98□□□□□ -0.01
PKNOX1P55347 AL136317.3-201ENST00000618497 906 ntBASIC14.98□□□□□ -0.01
PKNOX1P55347 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.98□□□□□ -0.01
PKNOX1P55347 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PKNOX1P55347 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PKNOX1P55347 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PKNOX1P55347 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
PKNOX1P55347 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.97□□□□□ -0.01
PKNOX1P55347 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.97□□□□□ -0.01
PKNOX1P55347 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.97□□□□□ -0.01
PKNOX1P55347 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.97□□□□□ -0.01
PKNOX1P55347 AC092865.5-201ENST00000545435 363 ntBASIC14.97□□□□□ -0.01
PKNOX1P55347 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.97□□□□□ -0.01
PKNOX1P55347 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
PKNOX1P55347 AC073592.8-201ENST00000624126 511 ntBASIC14.97□□□□□ -0.01
PKNOX1P55347 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 AC134684.3-201ENST00000641758 218 ntBASIC14.97□□□□□ -0.01
PKNOX1P55347 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.97□□□□□ -0.01
PKNOX1P55347 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.97□□□□□ -0.01
PKNOX1P55347 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PKNOX1P55347 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.96□□□□□ -0.01
PKNOX1P55347 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.96□□□□□ -0.01
PKNOX1P55347 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
PKNOX1P55347 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PKNOX1P55347 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
PKNOX1P55347 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 AC004967.1-201ENST00000453589 447 ntBASIC14.96□□□□□ -0.01
PKNOX1P55347 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.96□□□□□ -0.01
PKNOX1P55347 AC109322.1-201ENST00000524499 1264 ntBASIC14.96□□□□□ -0.01
PKNOX1P55347 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.96□□□□□ -0.01
PKNOX1P55347 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.96□□□□□ -0.01
PKNOX1P55347 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.96□□□□□ -0.01
PKNOX1P55347 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
PKNOX1P55347 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.96□□□□□ -0.01
PKNOX1P55347 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.96□□□□□ -0.01
PKNOX1P55347 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.96□□□□□ -0.01
PKNOX1P55347 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.96□□□□□ -0.01
PKNOX1P55347 AL109936.8-201ENST00000641772 604 ntBASIC14.96□□□□□ -0.01
PKNOX1P55347 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PKNOX1P55347 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PKNOX1P55347 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
PKNOX1P55347 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PKNOX1P55347 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
PKNOX1P55347 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PKNOX1P55347 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PKNOX1P55347 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PKNOX1P55347 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms