Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
FOXA1P55317 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
FOXA1P55317 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA1P55317 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA1P55317 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA1P55317 AL353779.1-201ENST00000434793 351 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA1P55317 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
FOXA1P55317 AC135586.1-201ENST00000539323 574 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 AC107373.2-201ENST00000607735 490 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.71□□□□□ -0.05
FOXA1P55317 AL390754.1-201ENST00000619088 582 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.71□□□□□ -0.05
FOXA1P55317 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
FOXA1P55317 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 AC015802.1-201ENST00000588104 1449 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA1P55317 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
FOXA1P55317 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
FOXA1P55317 AC136759.1-202ENST00000530858 2194 ntBASIC14.71□□□□□ -0.05
FOXA1P55317 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA1P55317 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA1P55317 FLJ16779-201ENST00000612722 7638 ntBASIC14.71□□□□□ -0.06
FOXA1P55317 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA1P55317 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
FOXA1P55317 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.71□□□□□ -0.06
FOXA1P55317 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA1P55317 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.71□□□□□ -0.06
FOXA1P55317 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA1P55317 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
FOXA1P55317 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.7□□□□□ -0.06
FOXA1P55317 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.7□□□□□ -0.06
FOXA1P55317 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.7□□□□□ -0.06
FOXA1P55317 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
FOXA1P55317 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 AC004890.2-204ENST00000481968 304 ntBASIC14.7□□□□□ -0.06
FOXA1P55317 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.7□□□□□ -0.06
FOXA1P55317 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.7□□□□□ -0.06
FOXA1P55317 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 AC018665.1-201ENST00000622927 1362 ntBASIC14.7□□□□□ -0.06
FOXA1P55317 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
FOXA1P55317 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA1P55317 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA1P55317 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
FOXA1P55317 AC104581.4-201ENST00000623126 3052 ntBASIC14.69□□□□□ -0.06
FOXA1P55317 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA1P55317 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms