Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
SPTA1P02549 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 AP000593.2-201ENST00000542775 1433 ntBASIC13.71□□□□□ -0.21
SPTA1P02549 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
SPTA1P02549 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
SPTA1P02549 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.71□□□□□ -0.22
SPTA1P02549 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.71□□□□□ -0.22
SPTA1P02549 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.71□□□□□ -0.22
SPTA1P02549 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 HLA-DPA2-205ENST00000433582 733 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 AC026320.2-201ENST00000434379 478 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC13.71□□□□□ -0.22
SPTA1P02549 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.71□□□□□ -0.22
SPTA1P02549 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.71□□□□□ -0.22
SPTA1P02549 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.71□□□□□ -0.22
SPTA1P02549 AC087045.2-201ENST00000606279 1003 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 AC006158.1-201ENST00000610661 249 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 AL157813.1-201ENST00000612996 587 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 AL136295.7-201ENST00000619226 1200 ntBASIC13.71□□□□□ -0.22
SPTA1P02549 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.71□□□□□ -0.22
SPTA1P02549 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
SPTA1P02549 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.71□□□□□ -0.22
SPTA1P02549 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CAP2P1-201ENST00000557743 1390 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SPTA1P02549 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.7□□□□□ -0.22
SPTA1P02549 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.7□□□□□ -0.22
SPTA1P02549 AC012362.1-201ENST00000434906 739 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC13.7□□□□□ -0.22
SPTA1P02549 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.7□□□□□ -0.22
SPTA1P02549 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 AC138466.5-201ENST00000624002 808 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 AC233280.19-201ENST00000633223 136 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 AC006449.6-201ENST00000612330 2296 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 PSMD4P1-201ENST00000433951 1109 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 CHCHD2P9-201ENST00000461726 456 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 MESTP3-201ENST00000503460 968 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 AP002803.1-201ENST00000528836 498 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC13.7□□□□□ -0.22
SPTA1P02549 MIR4649-201ENST00000582839 64 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SPTA1P02549 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.7□□□□□ -0.22
SPTA1P02549 FKBP4P6-201ENST00000457486 1332 ntBASIC13.7□□□□□ -0.22
SPTA1P02549 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SPTA1P02549 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms