Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
SHOX2O60902 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.21■□□□□ 0.03
SHOX2O60902 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.21■□□□□ 0.03
SHOX2O60902 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 AL513480.1-201ENST00000451731 511 ntBASIC15.21■□□□□ 0.03
SHOX2O60902 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.21■□□□□ 0.03
SHOX2O60902 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SHOX2O60902 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.21■□□□□ 0.03
SHOX2O60902 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
SHOX2O60902 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.21■□□□□ 0.03
SHOX2O60902 AC073389.1-201ENST00000595595 795 ntBASIC15.21■□□□□ 0.03
SHOX2O60902 GOLGA8IP-202ENST00000611635 2100 ntBASIC15.21■□□□□ 0.03
SHOX2O60902 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHOX2O60902 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SHOX2O60902 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SHOX2O60902 RN7SL832P-201ENST00000607781 1756 ntBASIC15.21■□□□□ 0.02
SHOX2O60902 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SHOX2O60902 AP002414.3-201ENST00000589352 1468 ntBASIC15.2■□□□□ 0.02
SHOX2O60902 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.2■□□□□ 0.02
SHOX2O60902 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.2■□□□□ 0.02
SHOX2O60902 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC15.2■□□□□ 0.02
SHOX2O60902 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 AZGP1P1-201ENST00000411909 902 ntBASIC15.2■□□□□ 0.02
SHOX2O60902 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.2■□□□□ 0.02
SHOX2O60902 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 LINC01711-201ENST00000598340 967 ntBASIC15.2■□□□□ 0.02
SHOX2O60902 IFNL4P1-201ENST00000607083 540 ntBASIC15.2■□□□□ 0.02
SHOX2O60902 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC15.2■□□□□ 0.02
SHOX2O60902 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHOX2O60902 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHOX2O60902 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms