Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ATG4BQ9Y4P1 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 AP006294.1-201ENST00000415407 339 ntBASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 AP001063.1-201ENST00000568332 529 ntBASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 CU639417.3-201ENST00000624240 1404 ntBASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 LINC01101-201ENST00000622953 1884 ntBASIC14.4□□□□□ -0.1
ATG4BQ9Y4P1 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
ATG4BQ9Y4P1 AC106881.1-201ENST00000605849 3329 ntBASIC14.4□□□□□ -0.11
ATG4BQ9Y4P1 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AL365209.1-201ENST00000624418 6473 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 ACKR1-201ENST00000368121 1240 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 KLF2P2-201ENST00000416807 1039 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AC114812.1-204ENST00000449669 728 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AC093433.1-201ENST00000458048 571 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AP005019.2-201ENST00000615104 511 ntBASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ATG4BQ9Y4P1 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms