Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 RPSAP43-201ENST00000402237 625 ntBASIC14.4□□□□□ -0.1
VAPAQ9P0L0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 TPT1P11-201ENST00000458482 498 ntBASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 MIR3687-2-201ENST00000577708 61 ntBASIC14.4□□□□□ -0.1
VAPAQ9P0L0 MIR3687-1-201ENST00000614492 61 ntBASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VAPAQ9P0L0 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 SDHAP3-202ENST00000515467 728 ntBASIC14.39□□□□□ -0.11
VAPAQ9P0L0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 BEND3P1-201ENST00000421591 1944 ntBASIC14.39□□□□□ -0.11
VAPAQ9P0L0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VAPAQ9P0L0 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AL354702.1-201ENST00000442006 1960 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms