Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 ZNF259P1-201ENST00000407656 1365 ntBASIC13.95□□□□□ -0.18
CLN6Q9NWW5 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.95□□□□□ -0.18
CLN6Q9NWW5 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 REXO1L4P-201ENST00000605109 1937 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ADH5P3-201ENST00000433842 1137 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPCS2P4-201ENST00000436160 681 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPDYE11-202ENST00000450699 704 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPDYE9P-201ENST00000570642 692 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPDYE10P-202ENST00000612005 668 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPDYE8P-202ENST00000612377 668 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CLN6Q9NWW5 AC055811.4-201ENST00000624039 1754 ntBASIC13.94□□□□□ -0.18
CLN6Q9NWW5 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.93□□□□□ -0.18
CLN6Q9NWW5 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 IL9RP2-201ENST00000423948 1312 ntBASIC13.93□□□□□ -0.18
CLN6Q9NWW5 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TPM4P1-201ENST00000436100 807 ntBASIC13.93□□□□□ -0.18
CLN6Q9NWW5 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.93□□□□□ -0.18
CLN6Q9NWW5 TPT1P11-201ENST00000458482 498 ntBASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms