Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 AC004461.1-201ENST00000412461 403 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 TSEN15P1-201ENST00000423257 515 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 GPS2P2-201ENST00000430745 888 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 RBPMS2P1-201ENST00000437762 623 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 AL133215.2-201ENST00000609242 977 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 SPDYE14P-201ENST00000442619 822 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AC027612.4-201ENST00000605371 583 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 RN7SL828P-201ENST00000607615 303 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AC006504.5-208ENST00000588784 2401 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 AL928921.2-201ENST00000641325 2442 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 REXO1L4P-201ENST00000605109 1937 ntBASIC13.35□□□□□ -0.27
NKX3-1Q99801 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX3-1Q99801 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX3-1Q99801 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
NKX3-1Q99801 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX3-1Q99801 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms