Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 AC012508.2-201ENST00000567613 1472 ntBASIC13.47□□□□□ -0.25
SOX2P48431 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
SOX2P48431 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.46□□□□□ -0.25
SOX2P48431 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX2P48431 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX2P48431 SPDYE17-201ENST00000412399 783 ntBASIC13.46□□□□□ -0.25
SOX2P48431 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX2P48431 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.46□□□□□ -0.25
SOX2P48431 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
SOX2P48431 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.46□□□□□ -0.25
SOX2P48431 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.46□□□□□ -0.25
SOX2P48431 SLED1-202ENST00000512051 380 ntBASIC13.46□□□□□ -0.25
SOX2P48431 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
SOX2P48431 TSFM-210ENST00000550559 897 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX2P48431 AC015910.1-201ENST00000579400 975 ntBASIC13.46□□□□□ -0.25
SOX2P48431 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX2P48431 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.46□□□□□ -0.25
SOX2P48431 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX2P48431 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SOX2P48431 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX2P48431 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX2P48431 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SOX2P48431 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.46□□□□□ -0.26
SOX2P48431 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SOX2P48431 AC018442.1-201ENST00000421439 2061 ntBASIC13.46□□□□□ -0.26
SOX2P48431 PEG13-201ENST00000631594 5667 ntBASIC13.46□□□□□ -0.26
SOX2P48431 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX2P48431 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 AC074338.1-201ENST00000416825 156 ntBASIC13.45□□□□□ -0.26
SOX2P48431 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 HTR5BP-201ENST00000430851 1154 ntBASIC13.45□□□□□ -0.26
SOX2P48431 KRT18P64-201ENST00000434946 1219 ntBASIC13.45□□□□□ -0.26
SOX2P48431 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 ALG1L5P-201ENST00000482043 771 ntBASIC13.45□□□□□ -0.26
SOX2P48431 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX2P48431 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX2P48431 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX2P48431 RN7SL828P-201ENST00000607615 303 ntBASIC13.45□□□□□ -0.26
SOX2P48431 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.45□□□□□ -0.26
SOX2P48431 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SOX2P48431 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX2P48431 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX2P48431 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms