Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.793e-6■□□□□ 9.7
YBX3P16989 YIF1A-211ENST00000526497 516 ntTSL 519.33■□□□□ 0.683e-6■□□□□ 9.7
YBX3P16989 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.089e-10■□□□□ 9.7
YBX3P16989 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.089e-10■□□□□ 9.7
YBX3P16989 CDV3-209ENST00000515421 1305 ntTSL 3 BASIC10.9□□□□□ -0.663e-6■□□□□ 9.7
YBX3P16989 CDV3-202ENST00000420115 3621 ntTSL 2 BASIC10.18□□□□□ -0.783e-6■□□□□ 9.7
YBX3P16989 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.149e-10■□□□□ 9.7
YBX3P16989 PABPC1-217ENST00000521067 492 ntTSL 327.91■■■□□ 2.064e-27■□□□□ 9.7
YBX3P16989 RACK1-203ENST00000502844 1460 ntTSL 318■□□□□ 0.479e-44■□□□□ 9.7
YBX3P16989 PPAT-205ENST00000510643 808 ntTSL 519.83■□□□□ 0.777e-7■□□□□ 9.7
YBX3P16989 PPAT-204ENST00000507724 563 ntTSL 317.01■□□□□ 0.317e-7■□□□□ 9.7
YBX3P16989 PPAT-201ENST00000264220 3682 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.547e-7■□□□□ 9.7
YBX3P16989 PPAT-203ENST00000507648 928 ntTSL 510.7□□□□□ -0.77e-7■□□□□ 9.7
YBX3P16989 NOP53-210ENST00000599582 626 ntTSL 317.94■□□□□ 0.468e-12■□□□□ 9.7
YBX3P16989 ZNF317-204ENST00000590152 2312 ntTSL 210.27□□□□□ -0.772e-6■□□□□ 9.7
YBX3P16989 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.481e-20■□□□□ 9.7
YBX3P16989 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.421e-20■□□□□ 9.7
YBX3P16989 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.371e-20■□□□□ 9.7
YBX3P16989 ZCRB1-202ENST00000548022 396 ntTSL 212.72□□□□□ -0.372e-7■□□□□ 9.7
YBX3P16989 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.984e-9■□□□□ 9.7
YBX3P16989 MKNK2-207ENST00000588014 2413 ntTSL 218.24■□□□□ 0.512e-6■□□□□ 9.7
YBX3P16989 MKNK2-208ENST00000589441 803 ntTSL 516.48■□□□□ 0.232e-6■□□□□ 9.7
YBX3P16989 MKNK2-206ENST00000587416 4093 ntTSL 213.15□□□□□ -0.32e-6■□□□□ 9.7
YBX3P16989 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC12.46□□□□□ -0.412e-6■□□□□ 9.7
YBX3P16989 AP2M1-208ENST00000442686 673 ntTSL 212.9□□□□□ -0.342e-9■□□□□ 9.7
YBX3P16989 SAT1-205ENST00000462639 826 ntTSL 27.02□□□□□ -1.294e-11■□□□□ 9.7
YBX3P16989 IARS-205ENST00000443024 4341 ntTSL 5 BASIC8.84□□□□□ -0.998e-7■□□□□ 9.7
YBX3P16989 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC8.33□□□□□ -1.088e-7■□□□□ 9.7
YBX3P16989 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.93□□□□□ -1.38e-7■□□□□ 9.7
YBX3P16989 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.318e-7■□□□□ 9.7
YBX3P16989 MVD-210ENST00000565610 507 ntTSL 326.25■■□□□ 1.795e-9■□□□□ 9.7
YBX3P16989 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.645e-9■□□□□ 9.7
YBX3P16989 MVD-216ENST00000568709 809 ntTSL 524.29■■□□□ 1.485e-9■□□□□ 9.7
YBX3P16989 MVD-214ENST00000567064 758 ntTSL 324.15■■□□□ 1.465e-9■□□□□ 9.7
YBX3P16989 MVD-208ENST00000563785 888 ntTSL 223.4■■□□□ 1.345e-9■□□□□ 9.7
YBX3P16989 MVD-217ENST00000569177 870 ntTSL 522.85■■□□□ 1.255e-9■□□□□ 9.7
YBX3P16989 MVD-215ENST00000568133 853 ntTSL 321.36■■□□□ 1.015e-9■□□□□ 9.7
YBX3P16989 MVD-206ENST00000563170 904 ntTSL 321.35■■□□□ 1.015e-9■□□□□ 9.7
YBX3P16989 CSDE1-207ENST00000483407 741 ntTSL 28.1□□□□□ -1.111e-11■□□□□ 9.7
YBX3P16989 YY1-206ENST00000623799 2742 nt9.61□□□□□ -0.872e-6■□□□□ 9.7
YBX3P16989 OTUD5-207ENST00000484499 924 ntTSL 512.56□□□□□ -0.42e-8■□□□□ 9.7
YBX3P16989 OTUD5-206ENST00000481142 402 ntTSL 27.04□□□□□ -1.282e-8■□□□□ 9.7
YBX3P16989 EEF1D-241ENST00000531931 614 ntTSL 330.01■■■□□ 2.392e-9■□□□□ 9.7
YBX3P16989 EEF1D-244ENST00000532543 791 ntTSL 322.63■■□□□ 1.212e-9■□□□□ 9.7
YBX3P16989 EEF1D-210ENST00000525223 610 ntTSL 316.79■□□□□ 0.282e-9■□□□□ 9.7
YBX3P16989 MPP1-213ENST00000482757 989 ntTSL 211.79□□□□□ -0.522e-18■□□□□ 9.7
YBX3P16989 MPP1-216ENST00000491955 2378 ntTSL 27.11□□□□□ -1.272e-18■□□□□ 9.7
YBX3P16989 PKLR-203ENST00000434082 580 ntTSL 519.84■□□□□ 0.771e-6■□□□□ 9.7
YBX3P16989 RPL18AP3-201ENST00000462885 528 ntBASIC18.81■□□□□ 0.62e-12■□□□□ 9.7
YBX3P16989 TXNRD1-209ENST00000526006 502 ntTSL 1 (best)9.08□□□□□ -0.962e-12■□□□□ 9.7
YBX3P16989 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.71■■□□□ 1.072e-6■□□□□ 9.7
YBX3P16989 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.7■□□□□ 0.422e-6■□□□□ 9.7
YBX3P16989 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.04■□□□□ -02e-6■□□□□ 9.7
YBX3P16989 NFE2L1-212ENST00000581319 481 ntTSL 313.86□□□□□ -0.192e-6■□□□□ 9.7
YBX3P16989 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.36e-8■□□□□ 9.7
YBX3P16989 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC22.63■■□□□ 1.216e-8■□□□□ 9.7
YBX3P16989 PSMC4-204ENST00000596386 929 ntTSL 221.43■■□□□ 1.025e-7■□□□□ 9.7
YBX3P16989 PSMC4-203ENST00000593455 1532 ntTSL 518.58■□□□□ 0.565e-7■□□□□ 9.7
YBX3P16989 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC18.4■□□□□ 0.545e-7■□□□□ 9.7
YBX3P16989 PSMC4-206ENST00000601697 1623 ntTSL 215.52■□□□□ 0.085e-7■□□□□ 9.7
YBX3P16989 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.065e-7■□□□□ 9.7
YBX3P16989 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.181e-6■□□□□ 9.7
YBX3P16989 ACTB-203ENST00000417101 472 ntTSL 429.7■■■□□ 2.354e-79■□□□□ 9.7
YBX3P16989 ACTB-211ENST00000480301 657 ntTSL 1 (best)27.23■■□□□ 1.954e-79■□□□□ 9.7
YBX3P16989 ACTB-205ENST00000432588 568 ntTSL 422.06■■□□□ 1.124e-79■□□□□ 9.7
YBX3P16989 ACTB-202ENST00000414620 561 ntTSL 421.05■□□□□ 0.964e-79■□□□□ 9.7
YBX3P16989 ACTB-206ENST00000443528 569 ntTSL 420.35■□□□□ 0.854e-79■□□□□ 9.7
YBX3P16989 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-8■□□□□ 9.7
YBX3P16989 USP7-215ENST00000566273 577 ntTSL 415.61■□□□□ 0.092e-9■□□□□ 9.7
YBX3P16989 USP7-214ENST00000566224 503 ntTSL 313.89□□□□□ -0.192e-9■□□□□ 9.7
YBX3P16989 USP7-212ENST00000566004 559 ntTSL 410.41□□□□□ -0.742e-9■□□□□ 9.7
YBX3P16989 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC9.34□□□□□ -0.912e-8■□□□□ 9.7
YBX3P16989 USP7-209ENST00000564117 479 ntTSL 48.87□□□□□ -0.992e-9■□□□□ 9.7
YBX3P16989 HK1-210ENST00000476368 605 ntTSL 37.03□□□□□ -1.282e-9■□□□□ 9.7
YBX3P16989 USP7-219ENST00000569230 569 ntTSL 56.82□□□□□ -1.322e-9■□□□□ 9.7
YBX3P16989 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.17□□□□□ -1.742e-8■□□□□ 9.7
YBX3P16989 TRIM28-211ENST00000597968 504 ntTSL 218.51■□□□□ 0.552e-32■□□□□ 9.7
YBX3P16989 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.881e-6■□□□□ 9.7
YBX3P16989 MEX3D-202ENST00000605173 2132 ntAPPRIS ALT2 TSL 1 (best)22.7■■□□□ 1.231e-6■□□□□ 9.7
YBX3P16989 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.145e-7■□□□□ 9.7
YBX3P16989 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC8.83□□□□□ -15e-7■□□□□ 9.7
YBX3P16989 PIH1D1-221ENST00000601807 998 ntTSL 523■■□□□ 1.274e-7■□□□□ 9.7
YBX3P16989 PIH1D1-218ENST00000599791 966 ntTSL 222.07■■□□□ 1.124e-7■□□□□ 9.7
YBX3P16989 PIH1D1-213ENST00000597415 874 ntTSL 522.07■■□□□ 1.124e-7■□□□□ 9.7
YBX3P16989 PIH1D1-220ENST00000601053 634 ntTSL 521.53■■□□□ 1.044e-7■□□□□ 9.7
YBX3P16989 PIH1D1-206ENST00000595516 841 ntTSL 320.69■□□□□ 0.94e-7■□□□□ 9.7
YBX3P16989 PIH1D1-217ENST00000599366 833 ntTSL 320.6■□□□□ 0.894e-7■□□□□ 9.7
YBX3P16989 PIH1D1-203ENST00000593900 932 ntTSL 219.53■□□□□ 0.724e-7■□□□□ 9.7
YBX3P16989 PIH1D1-205ENST00000595074 1037 ntTSL 219.28■□□□□ 0.684e-7■□□□□ 9.7
YBX3P16989 POT1-212ENST00000608057 2036 ntTSL 1 (best)9.75□□□□□ -0.855e-7■□□□□ 9.7
YBX3P16989 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.075e-7■□□□□ 9.7
YBX3P16989 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.63□□□□□ -1.355e-7■□□□□ 9.7
YBX3P16989 POT1-217ENST00000609106 2780 ntTSL 26.61□□□□□ -1.355e-7■□□□□ 9.7
YBX3P16989 POT1-211ENST00000607932 1827 ntTSL 1 (best)5.66□□□□□ -1.55e-7■□□□□ 9.7
YBX3P16989 APRT-203ENST00000562464 515 ntTSL 326.17■■□□□ 1.786e-11■□□□□ 9.7
YBX3P16989 ACTN1-206ENST00000544964 891 ntTSL 516.98■□□□□ 0.319e-8■□□□□ 9.7
YBX3P16989 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.994e-27■□□□□ 9.7
YBX3P16989 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.964e-27■□□□□ 9.7
YBX3P16989 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.9■□□□□ 0.944e-27■□□□□ 9.7
YBX3P16989 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.214e-27■□□□□ 9.7
Retrieved 100 of 29,075 protein–RNA pairs in 168.6 ms