Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 SPDYE17-201ENST00000412399 783 ntBASIC16.84■□□□□ 0.29
TPM1P09493 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.84■□□□□ 0.29
TPM1P09493 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.84■□□□□ 0.29
TPM1P09493 SLED1-202ENST00000512051 380 ntBASIC16.84■□□□□ 0.29
TPM1P09493 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
TPM1P09493 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.84■□□□□ 0.29
TPM1P09493 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.84■□□□□ 0.29
TPM1P09493 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TPM1P09493 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TPM1P09493 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC16.83■□□□□ 0.29
TPM1P09493 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TPM1P09493 PTENP1-202ENST00000532280 3996 ntBASIC16.83■□□□□ 0.29
TPM1P09493 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TPM1P09493 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.83■□□□□ 0.28
TPM1P09493 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TPM1P09493 AC023274.1-201ENST00000418278 595 ntBASIC16.83■□□□□ 0.28
TPM1P09493 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.83■□□□□ 0.28
TPM1P09493 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
TPM1P09493 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.83■□□□□ 0.28
TPM1P09493 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 AC018529.1-201ENST00000613063 361 ntBASIC16.83■□□□□ 0.28
TPM1P09493 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.83■□□□□ 0.28
TPM1P09493 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TPM1P09493 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TPM1P09493 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.83■□□□□ 0.28
TPM1P09493 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TPM1P09493 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TPM1P09493 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.82■□□□□ 0.28
TPM1P09493 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TPM1P09493 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.82■□□□□ 0.28
TPM1P09493 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TPM1P09493 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TPM1P09493 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
TPM1P09493 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms