Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 NOC2LP1-201ENST00000450578 752 ntBASIC18.13■□□□□ 0.49
COL4A1P02462 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 TMCO5B-205ENST00000530020 894 ntBASIC18.13■□□□□ 0.49
COL4A1P02462 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.13■□□□□ 0.49
COL4A1P02462 MIR4522-201ENST00000584932 87 ntBASIC18.13■□□□□ 0.49
COL4A1P02462 AC011491.1-203ENST00000637688 543 ntBASIC18.13■□□□□ 0.49
COL4A1P02462 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A1P02462 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 FRMPD2B-201ENST00000431305 1347 ntBASIC18.13■□□□□ 0.49
COL4A1P02462 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 AC026316.1-201ENST00000398900 414 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.12■□□□□ 0.49
COL4A1P02462 AC078991.1-201ENST00000437297 610 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 AC087045.2-201ENST00000606279 1003 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 AC006504.5-208ENST00000588784 2401 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
COL4A1P02462 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.12■□□□□ 0.49
COL4A1P02462 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
COL4A1P02462 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A1P02462 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL4A1P02462 AC009884.2-201ENST00000603110 324 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 AC092171.5-201ENST00000608012 942 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 AC084781.1-201ENST00000613737 656 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 MIR7845-201ENST00000618396 99 ntBASIC18.12■□□□□ 0.49
COL4A1P02462 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A1P02462 KHSRPP1-201ENST00000427983 1768 ntBASIC18.11■□□□□ 0.49
COL4A1P02462 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL4A1P02462 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL4A1P02462 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
COL4A1P02462 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A1P02462 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A1P02462 MIR557-201ENST00000385239 98 ntBASIC18.11■□□□□ 0.49
COL4A1P02462 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A1P02462 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 AC098935.1-201ENST00000446057 611 ntBASIC18.11■□□□□ 0.49
COL4A1P02462 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A1P02462 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A1P02462 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms