Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AL589702.1-201ENST00000641229 1509 ntBASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 GHSR-202ENST00000427970 912 ntBASIC11.51□□□□□ -0.57
HLA-DQA1P01909 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AL031055.1-201ENST00000606362 631 ntBASIC11.51□□□□□ -0.57
HLA-DQA1P01909 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 CES1P1-201ENST00000421606 1704 ntBASIC11.51□□□□□ -0.57
HLA-DQA1P01909 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 BNIP3P1-202ENST00000550043 1585 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 CSPG4P11-201ENST00000560634 4910 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AC073648.2-201ENST00000510116 352 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 NKAPP1-205ENST00000585790 367 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AL355877.3-201ENST00000622820 899 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AL805961.1-202ENST00000641562 540 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 SF1-209ENST00000433274 2317 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 PAN3-AS1-201ENST00000563843 1351 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AC016397.2-201ENST00000624848 1985 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HLA-DQA1P01909 AP000845.1-201ENST00000581677 2131 ntBASIC11.5□□□□□ -0.57
HLA-DQA1P01909 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms