Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 GRK6P1-201ENST00000400595 1711 ntBASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 RN7SL399P-201ENST00000471648 279 ntBASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 AC015656.1-201ENST00000624209 3578 ntBASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMCH1Q9UPQ0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC018665.1-201ENST00000622927 1362 ntBASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC023090.2-201ENST00000625182 2110 ntBASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC104794.3-201ENST00000566840 1248 ntBASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AL049840.4-201ENST00000602422 811 ntBASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 AC139530.3-201ENST00000620344 690 ntBASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMCH1Q9UPQ0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AC023310.3-201ENST00000557027 670 ntBASIC17.91■□□□□ 0.46
LIMCH1Q9UPQ0 AC100756.1-201ENST00000562736 682 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms