Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.63■□□□□ 0.25
LIMA1Q9UHB6 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 BTBD7P1-201ENST00000447253 1453 ntBASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC022447.6-201ENST00000515522 438 ntBASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 AC009407.1-201ENST00000568958 598 ntBASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 CICP4-201ENST00000447359 2812 ntBASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.62■□□□□ 0.25
LIMA1Q9UHB6 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 TREML5P-201ENST00000421694 576 ntBASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AC004449.1-201ENST00000564240 433 ntBASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 AL138799.1-201ENST00000448213 1675 ntBASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LIMA1Q9UHB6 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.6■□□□□ 0.25
LIMA1Q9UHB6 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms