Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 HSPA7-201ENST00000445535 1927 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 NIN-202ENST00000324330 4364 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 AC006504.5-208ENST00000588784 2401 ntBASIC16.48■□□□□ 0.23
CCDC42Q96M95 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 RPL37AP1-201ENST00000412502 279 ntBASIC16.48■□□□□ 0.23
CCDC42Q96M95 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 AC005840.4-201ENST00000541242 2494 ntBASIC16.48■□□□□ 0.23
CCDC42Q96M95 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.48■□□□□ 0.23
CCDC42Q96M95 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
CCDC42Q96M95 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC42Q96M95 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms