Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AL133267.1-201ENST00000398220 340 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ACTG1P3-201ENST00000431775 1114 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SLC25A47P1-201ENST00000531577 414 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 PTP4A1P2-201ENST00000546033 454 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AC124283.3-201ENST00000570869 594 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 MIR5189-201ENST00000577370 114 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AC233724.13-201ENST00000598383 410 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AC005252.3-201ENST00000623855 2258 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AC018665.1-201ENST00000622927 1362 ntBASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AC010327.5-201ENST00000586923 3061 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 BOLA2P3-201ENST00000404566 256 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AC022210.1-201ENST00000449856 793 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 MIR4313-201ENST00000580760 101 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AC000095.1-201ENST00000603208 874 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AL022328.1-201ENST00000610050 478 ntBASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CLIP3Q96DZ5 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms