Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 TREML5P-201ENST00000421694 576 ntBASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AL158212.4-201ENST00000624062 1286 ntBASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AL589987.1-201ENST00000453380 819 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AC097493.3-201ENST00000509725 367 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 SPDYE18-201ENST00000510091 1050 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AL360270.3-201ENST00000609118 1348 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AC100757.3-201ENST00000622361 1406 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 AC041040.2-201ENST00000622926 2899 ntBASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ATG4AQ8WYN0 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 GRK6P1-201ENST00000400595 1711 ntBASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms