Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 HIST2H2BA-201ENST00000412169 381 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 TLE1P1-201ENST00000422965 589 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AL035414.1-201ENST00000451327 857 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 MRPL22P1-201ENST00000505398 616 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AC007326.1-201ENST00000604539 458 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AP001184.1-201ENST00000637936 376 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 AC105250.1-201ENST00000509378 2057 ntBASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 KRT8P31-201ENST00000504812 1408 ntBASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 TSPY25P-201ENST00000429463 745 ntBASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 FTH1P22-201ENST00000456305 520 ntBASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ALG1L6P-201ENST00000515248 758 ntBASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 AC018629.1-201ENST00000623381 1736 ntBASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
KRT28Q7Z3Y7 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 LINC02199-201ENST00000506655 2702 ntBASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 REEP5-205ENST00000504247 480 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms