Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AP001582.1-201ENST00000525856 295 ntBASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SYNE3Q6ZMZ3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SYNE3Q6ZMZ3 AC093525.8-201ENST00000624099 1342 ntBASIC17.96■□□□□ 0.46
SYNE3Q6ZMZ3 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
SYNE3Q6ZMZ3 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 WASH4P-201ENST00000564273 1246 ntBASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 WFDC1-204ENST00000613603 549 ntBASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 AL033527.5-201ENST00000641382 801 ntBASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ZBED1P1-201ENST00000502364 1930 ntBASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 AP000845.1-201ENST00000581677 2131 ntBASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SYNE3Q6ZMZ3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 AP006294.1-201ENST00000415407 339 ntBASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 CU634019.7-201ENST00000624153 1185 ntBASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 FP236241.2-201ENST00000624906 1185 ntBASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SYNE3Q6ZMZ3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms