Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGCS2P54868 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGCS2P54868 AC244394.1-201ENST00000435000 1665 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HMGCS2P54868 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.39■□□□□ 0.37
HMGCS2P54868 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGCS2P54868 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGCS2P54868 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 RN7SKP214-201ENST00000364208 315 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGCS2P54868 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 ISCA2P1-201ENST00000425548 448 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 VDAC1P1-201ENST00000439229 848 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGCS2P54868 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 AC234782.1-201ENST00000451950 919 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 AC008805.1-201ENST00000590892 364 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 AL132994.2-201ENST00000603120 687 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
HMGCS2P54868 AL353770.1-201ENST00000614915 403 ntBASIC17.39■□□□□ 0.37
HMGCS2P54868 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HMGCS2P54868 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGCS2P54868 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGCS2P54868 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGCS2P54868 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGCS2P54868 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGCS2P54868 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGCS2P54868 PDIA3P2-201ENST00000428073 158 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 FAM58BP-201ENST00000439056 645 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 AC006335.1-201ENST00000445200 547 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 HLA-J-204ENST00000495278 958 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 RCC2P8-201ENST00000502779 1035 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.38■□□□□ 0.37
HMGCS2P54868 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGCS2P54868 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.38■□□□□ 0.37
HMGCS2P54868 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AP000346.4-201ENST00000614827 381 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 MBLAC2-202ENST00000514906 1936 ntBASIC17.38■□□□□ 0.37
HMGCS2P54868 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGCS2P54868 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGCS2P54868 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGCS2P54868 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
HMGCS2P54868 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms