Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PTPN6P29350 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.47□□□□□ -0.09
PTPN6P29350 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PTPN6P29350 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.47□□□□□ -0.09
PTPN6P29350 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.47□□□□□ -0.09
PTPN6P29350 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.47□□□□□ -0.09
PTPN6P29350 SPDYE18-201ENST00000510091 1050 ntBASIC14.47□□□□□ -0.09
PTPN6P29350 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.47□□□□□ -0.09
PTPN6P29350 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.47□□□□□ -0.09
PTPN6P29350 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 AC104794.3-201ENST00000566840 1248 ntBASIC14.47□□□□□ -0.09
PTPN6P29350 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
PTPN6P29350 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
PTPN6P29350 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.47□□□□□ -0.09
PTPN6P29350 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.47□□□□□ -0.09
PTPN6P29350 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
PTPN6P29350 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.47□□□□□ -0.09
PTPN6P29350 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
PTPN6P29350 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
PTPN6P29350 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PTPN6P29350 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
PTPN6P29350 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.46□□□□□ -0.09
PTPN6P29350 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.46□□□□□ -0.09
PTPN6P29350 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
PTPN6P29350 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
PTPN6P29350 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.46□□□□□ -0.1
PTPN6P29350 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
PTPN6P29350 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
PTPN6P29350 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
PTPN6P29350 AC027601.5-201ENST00000624065 2482 ntBASIC14.46□□□□□ -0.1
PTPN6P29350 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.45□□□□□ -0.1
PTPN6P29350 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
PTPN6P29350 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTPN6P29350 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTPN6P29350 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTPN6P29350 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.45□□□□□ -0.1
PTPN6P29350 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
PTPN6P29350 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
PTPN6P29350 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
PTPN6P29350 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms