Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VCANP13611 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VCANP13611 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VCANP13611 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC15.33■□□□□ 0.04
VCANP13611 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.33■□□□□ 0.04
VCANP13611 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC15.33■□□□□ 0.04
VCANP13611 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.33■□□□□ 0.04
VCANP13611 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC15.33■□□□□ 0.04
VCANP13611 AC009145.4-201ENST00000625119 1294 ntBASIC15.33■□□□□ 0.04
VCANP13611 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.33■□□□□ 0.04
VCANP13611 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 AC092127.1-201ENST00000567093 3455 ntBASIC15.33■□□□□ 0.04
VCANP13611 AL137783.1-201ENST00000623494 1896 ntBASIC15.33■□□□□ 0.04
VCANP13611 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
VCANP13611 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.33■□□□□ 0.04
VCANP13611 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.33■□□□□ 0.04
VCANP13611 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VCANP13611 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.32■□□□□ 0.04
VCANP13611 GPX3-202ENST00000517973 612 ntTSL 3 BASIC15.32■□□□□ 0.04
VCANP13611 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 AC100827.2-201ENST00000563214 1194 ntBASIC15.32■□□□□ 0.04
VCANP13611 RN7SL602P-201ENST00000578326 324 ntBASIC15.32■□□□□ 0.04
VCANP13611 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.32■□□□□ 0.04
VCANP13611 RN7SL718P-201ENST00000581254 303 ntBASIC15.32■□□□□ 0.04
VCANP13611 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 AL121949.1-201ENST00000402043 968 ntBASIC15.32■□□□□ 0.04
VCANP13611 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.32■□□□□ 0.04
VCANP13611 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.32■□□□□ 0.04
VCANP13611 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 PGAM1P11-201ENST00000416729 680 ntBASIC15.32■□□□□ 0.04
VCANP13611 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.32■□□□□ 0.04
VCANP13611 AC098934.1-203ENST00000442868 1262 ntBASIC15.32■□□□□ 0.04
VCANP13611 MESTP3-201ENST00000503460 968 ntBASIC15.32■□□□□ 0.04
VCANP13611 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC15.32■□□□□ 0.04
VCANP13611 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.32■□□□□ 0.04
VCANP13611 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VCANP13611 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
VCANP13611 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 THAP4-203ENST00000402545 833 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC15.31■□□□□ 0.04
VCANP13611 AC078814.4-201ENST00000546650 327 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms