Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.53□□□□□ -0.56
HLA-DQA1P01909 QPRT-203ENST00000562473 579 ntTSL 3 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 AL691432.3-201ENST00000621860 400 ntBASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HLA-DQA1P01909 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 INVS-201ENST00000262456 2968 ntTSL 5 BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 TNN-202ENST00000621086 4234 ntTSL 5 BASIC11.52□□□□□ -0.56
HLA-DQA1P01909 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 TP73-207ENST00000378290 1831 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 RNU1-129P-201ENST00000384064 167 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 HIST2H3DP1-201ENST00000401004 416 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PTCHD3P3-201ENST00000403073 906 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PMS2P4-201ENST00000412466 1052 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PP7080-204ENST00000510714 601 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC106795.1-205ENST00000512851 1056 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 U1.21-201ENST00000580816 167 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 REXO1L6P-202ENST00000619970 1078 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 CICP11-201ENST00000434745 2827 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AC118758.2-201ENST00000614242 2813 ntBASIC11.52□□□□□ -0.57
HLA-DQA1P01909 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HLA-DQA1P01909 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.51□□□□□ -0.57
HLA-DQA1P01909 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms