Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CACNA1FO60840 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.77■□□□□ 0.6
CACNA1FO60840 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CACNA1FO60840 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CACNA1FO60840 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CACNA1FO60840 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 RNMTL1P1-201ENST00000454103 560 ntBASIC18.77■□□□□ 0.6
CACNA1FO60840 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.77■□□□□ 0.6
CACNA1FO60840 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CACNA1FO60840 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CACNA1FO60840 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC18.77■□□□□ 0.6
CACNA1FO60840 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CACNA1FO60840 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1FO60840 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1FO60840 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
CACNA1FO60840 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1FO60840 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CACNA1FO60840 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CACNA1FO60840 CALR4P-201ENST00000431943 946 ntBASIC18.77■□□□□ 0.59
CACNA1FO60840 OR2R1P-201ENST00000441404 914 ntBASIC18.77■□□□□ 0.59
CACNA1FO60840 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.77■□□□□ 0.59
CACNA1FO60840 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.77■□□□□ 0.59
CACNA1FO60840 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.77■□□□□ 0.59
CACNA1FO60840 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.77■□□□□ 0.59
CACNA1FO60840 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC18.77■□□□□ 0.59
CACNA1FO60840 AP000346.4-201ENST00000614827 381 ntBASIC18.77■□□□□ 0.59
CACNA1FO60840 AC027601.3-201ENST00000622907 509 ntBASIC18.77■□□□□ 0.59
CACNA1FO60840 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 AC018629.1-201ENST00000623381 1736 ntBASIC18.76■□□□□ 0.59
CACNA1FO60840 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.76■□□□□ 0.59
CACNA1FO60840 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC18.76■□□□□ 0.59
CACNA1FO60840 LINC00554-201ENST00000564841 3011 ntBASIC18.76■□□□□ 0.59
CACNA1FO60840 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CACNA1FO60840 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.76■□□□□ 0.59
CACNA1FO60840 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CACNA1FO60840 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 CICP12-201ENST00000455801 843 ntBASIC18.76■□□□□ 0.59
CACNA1FO60840 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.76■□□□□ 0.59
CACNA1FO60840 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.76■□□□□ 0.59
CACNA1FO60840 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CACNA1FO60840 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
CACNA1FO60840 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.76■□□□□ 0.59
CACNA1FO60840 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 CYP4F23P-201ENST00000593402 1579 ntBASIC18.76■□□□□ 0.59
CACNA1FO60840 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CACNA1FO60840 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 KRTAP10-13P-201ENST00000412914 571 ntBASIC18.75■□□□□ 0.59
CACNA1FO60840 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CACNA1FO60840 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.75■□□□□ 0.59
CACNA1FO60840 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC18.75■□□□□ 0.59
CACNA1FO60840 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CACNA1FO60840 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CACNA1FO60840 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 AC106794.1-201ENST00000506935 792 ntBASIC18.75■□□□□ 0.59
CACNA1FO60840 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.75■□□□□ 0.59
CACNA1FO60840 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CACNA1FO60840 MIR6074-201ENST00000612054 107 ntBASIC18.75■□□□□ 0.59
CACNA1FO60840 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.75■□□□□ 0.59
CACNA1FO60840 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms