Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RNA5SP410-201ENST00000516285 106 ntBASIC11.21□□□□□ -0.61
SMKR1H3BMG3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
SMKR1H3BMG3 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
SMKR1H3BMG3 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MAPT-IT1-201ENST00000624111 3016 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC138969.3-201ENST00000546612 1459 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC138932.2-201ENST00000548268 1459 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC126755.4-201ENST00000549796 1459 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC140658.5-201ENST00000438532 169 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 VN2R19P-201ENST00000442399 1052 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 Z82170.1-201ENST00000625081 3192 ntBASIC11.2□□□□□ -0.62
SMKR1H3BMG3 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC11.2□□□□□ -0.62
SMKR1H3BMG3 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AC105206.1-202ENST00000314927 2368 ntBASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms