Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 MIR943-201ENST00000401286 94 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AC092580.3-201ENST00000430932 139 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 SDHAP3-202ENST00000515467 728 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 LINC01115-203ENST00000606068 577 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AL109936.8-201ENST00000641772 604 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C8orf49-201ENST00000525043 1968 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 REXO1L2P-201ENST00000425429 2069 ntBASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
RHBDD3Q9Y3P4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC087499.5-201ENST00000452760 1342 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 GRK6P1-201ENST00000400595 1711 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 RPL13P2-201ENST00000440687 659 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 DUX4L27-201ENST00000554796 1261 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AL158211.3-201ENST00000607385 239 ntBASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RHBDD3Q9Y3P4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms