Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AL157791.1-201ENST00000553667 1699 ntBASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 CMC1-204ENST00000423894 549 ntTSL 2 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AC022616.1-201ENST00000518688 554 ntBASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 GMFG-209ENST00000600322 622 ntTSL 5 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 PCBP2-OT1-201ENST00000634357 590 ntBASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC28.58■■■□□ 2.17
SHROOM4Q9ULL8 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 AC004899.1-201ENST00000424687 1714 ntBASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 PPOX-204ENST00000462866 473 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 NEU3-205ENST00000531619 582 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 MIR4649-201ENST00000582839 64 ntBASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 PKD1P1-201ENST00000458669 6805 ntBASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC28.57■■■□□ 2.16
SHROOM4Q9ULL8 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 PES1-204ENST00000402284 2144 ntTSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 INE2-201ENST00000630399 1874 ntBASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 AC090164.2-201ENST00000611487 516 ntBASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM4Q9ULL8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 AL031713.1-201ENST00000564813 661 ntBASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 AL136295.7-201ENST00000619226 1200 ntBASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 AC242376.2-201ENST00000619355 883 ntBASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SHROOM4Q9ULL8 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC28.54■■■□□ 2.16
SHROOM4Q9ULL8 AC009093.2-202ENST00000620513 2079 ntBASIC28.54■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms